
   18-Nov-2019 15:46:54 +0100

rootdir = ../191016_GeraldDoreenBob_Bats2
sampleName = Bat2_8nlps_RT
measNums = 1 2 3 4 5 6 7 8 9 10 
frameNums = 3000 3000 3000 3500 3500 3500 4000 4000 4000 4000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1139 cell sequences
cell traces covers the whole channel: 596 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 42
write results (554 cells):
----------
----------
554 cells written
<a href="matlab: opentoline('/media/bob/HikeBob4TB/02_dRT-DC-Experiments/00_analysis/CellPosDeformEval33.m',299,1)">299 </a>end
figure
a = sample.measData.cellData(2).data;
plot(a.xPosAcc,1-a.circularity,'.-')
a = sample.measData.cellData(30).data;
plot(a.xPosAcc,1-a.circularity,'.-')
a = sample.measData.cellData(31).data;
plot(a.xPosAcc,1-a.circularity,'.-')
sample.channelPositions.um

ans =

   68.3400  387.6000

if system_dependent('IsDebugMode')==1, dbcont; end
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1835 cell sequences
cell traces covers the whole channel: 752 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 60
write results (692 cells):
----------
----------
692 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1907 cell sequences
cell traces covers the whole channel: 692 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 68
write results (624 cells):
----------
----------
624 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1696 cell sequences
cell traces covers the whole channel: 643 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 56
write results (587 cells):
----------
----------
587 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1341 cell sequences
cell traces covers the whole channel: 544 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 21
write results (523 cells):
----------
----------
523 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1385 cell sequences
cell traces covers the whole channel: 529 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 15
write results (514 cells):
----------
----------
514 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1390 cell sequences
cell traces covers the whole channel: 598 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 15
write results (583 cells):
----------
----------
583 cells written
Converting 'M8_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1475 cell sequences
cell traces covers the whole channel: 621 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 20
write results (601 cells):
----------
----------
601 cells written
Converting 'M9_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1414 cell sequences
cell traces covers the whole channel: 573 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 16
write results (557 cells):
----------
----------
557 cells written
Converting 'M10_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1377 cell sequences
cell traces covers the whole channel: 568 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 16
write results (552 cells):
----------
----------
552 cells written
measurement: ../191016_GeraldDoreenBob_Bats2/Bat2_8nlps_RT/Online/
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	1139	596	554	554
2	1835	752	692	692
3	1907	692	624	624
4	1696	643	587	587
5	1341	544	523	523
6	1385	529	514	514
7	1390	598	583	583
8	1475	621	601	601
9	1414	573	557	557
10	1377	568	552	552

   9-Mar-2022 18:15:33 +0100

rootdir = ..\191016_GeraldDoreenBob_Bats2\
sampleName = 191016_Bat2_8nlps_RT
measNums = 10 1 2 3 4 5 6 7 8 9 
frameNums = 4000 3000 3000 3000 3500 3500 3500 4000 4000 4000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M10_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1377 cell sequences
cell traces covers the whole channel: 568 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 16
write results (552 cells):
----------
----------
552 cells written
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1139 cell sequences
cell traces covers the whole channel: 596 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 42
write results (554 cells):
----------
----------
554 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1835 cell sequences
cell traces covers the whole channel: 752 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 60
write results (692 cells):
----------
----------
692 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1907 cell sequences
cell traces covers the whole channel: 692 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 68
write results (624 cells):
----------
----------
624 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1696 cell sequences
cell traces covers the whole channel: 643 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 56
write results (587 cells):
----------
----------
587 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1341 cell sequences
cell traces covers the whole channel: 544 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 21
write results (523 cells):
----------
----------
523 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1385 cell sequences
cell traces covers the whole channel: 529 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 15
write results (514 cells):
----------
----------
514 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1390 cell sequences
cell traces covers the whole channel: 598 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 15
write results (583 cells):
----------
----------
583 cells written
Converting 'M8_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1475 cell sequences
cell traces covers the whole channel: 621 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 20
write results (601 cells):
----------
----------
601 cells written
Converting 'M9_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 1414 cell sequences
cell traces covers the whole channel: 573 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 16
write results (557 cells):
----------
----------
557 cells written
measurement: ..\191016_GeraldDoreenBob_Bats2\191016_Bat2_8nlps_RT\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
10	1377	568	552	552
1	1139	596	554	554
2	1835	752	692	692
3	1907	692	624	624
4	1696	643	587	587
5	1341	544	523	523
6	1385	529	514	514
7	1390	598	583	583
8	1475	621	601	601
9	1414	573	557	557
